Univ.-Prof. David Berry, Privatdoz. PhD
1 - 20 out of 120

Deehan, E. C., Zhang, Z., Nguyen, N. K., Perez-Muñoz, M. E., Cole, J., Riva, A., Berry, D., Prado, C. M., & Walter, J. (2024). Adaptation to tolerate high doses of arabinoxylan is associated with fecal levels of Bifidobacterium longum. Gut microbes, 16(1), [2363021]. https://doi.org/10.1080/19490976.2024.2363021


Lee, K. S., Landry, Z., Athar, A., Alcolombri, U., Pramoj Na Ayutthaya, P., Berry, D., de Bettignies, P., Cheng, J-X., Csucs, G., Cui, L., Deckert, V., Dieing, T., Dionne, J., Doskocil, O., D'Souza, G., García-Timermans, C., Gierlinger, N., Goda, K., Hatzenpichler, R., ... Stocker, R. (2024). MicrobioRaman: an open-access web repository for microbiological Raman spectroscopy data. Nature Microbiology, 9(5), 1152-1156. https://doi.org/10.1038/s41564-024-01656-3





Riva, A., Rasoulimehrabani, H., Cruz-Rubio, J. M., Schnorr, S. L., von Baeckmann, C., Inan, D., Nikolov, G., Herbold, C. W., Hausmann, B., Pjevac, P., Schintlmeister, A., Spittler, A., Palatinszky, M., Kadunic, A., Hieger, N., Del Favero, G., von Bergen, M., Jehmlich, N., Watzka, M., ... Berry, D. (2023). Identification of inulin-responsive bacteria in the gut microbiota via multi-modal activity-based sorting. Nature Communications, 14(1), [8210]. https://doi.org/10.1038/s41467-023-43448-z


Doulidis, P. G., Galler, A. I., Hausmann, B., Berry, D., Rodríguez-Rojas, A., & Burgener, I. A. (2023). Gut microbiome signatures of Yorkshire Terrier enteropathy during disease and remission. Scientific Reports, 13(1), [4337]. https://doi.org/10.1038/s41598-023-31024-w

Timmis, K., Berry, D., Bonfante, P., Coleman, M., Cunliffe, M., Danchin, A., Galperin, M., Huang, W., Lopez, P., Stewart, F., & Wood, T. (2023). Juan Luis Ramos: An exceptional Editor of Environmental Microbiology. Environmental Microbiology, 25(3), 595-596. https://doi.org/10.1111/1462-2920.16315



Vallier, M., Suwandi, A., Ehrhardt, K., Belheouane, M., Berry, D., Čepić, A., Galeev, A., Johnsen, J. M., Grassl, G. A., & Baines, J. F. (2023). Pathometagenomics reveals susceptibility to intestinal infection by Morganella to be mediated by the blood group-related B4galnt2 gene in wild mice. Gut microbes, 15(1), [2164448]. https://doi.org/10.1080/19490976.2022.2164448



Baumgartner, M., Zirnbauer, R., Schlager, S., Mertens, D., Gasche, N., Sladek, B., Herbold, C., Bochkareva, O., Emelianenko, V., Vogelsang, H., Lang, M., Klotz, A., Moik, B., Makristathis, A., Berry, D., Dabsch, S., Khare, V., & Gasche, C. (2022). Atypical enteropathogenic E. coli are associated with disease activity in ulcerative colitis. Gut microbes, 14(1), [e2143218]. https://doi.org/10.1080/19490976.2022.2143218

Bayer, N., Hausman, B., Pandey, R. V., Deckert, F., Gail, L-M., Strobl, J., Pjevac, P., Krall, C., Unterluggauer, L., Redl, A., Bachmayr, V., Kleissl, L., Nehr, M., Kirkegaard, R., Makristathis, A., Watzenboeck, M. L., Nica, R., Staud, C., Hammerl, L., ... Stary, G. (2022). Disturbances in microbial skin recolonization and cutaneous immune response following allogeneic stem cell transfer. Leukemia, 36(11), 2705-2714. https://doi.org/10.1038/s41375-022-01712-z


1 - 20 out of 120

Invited Speaker: Hungarian Society for Microbiology

David Berry (Speaker)

5 Jul 2023

Activity: Talks and presentationsTalk or oral contributionScience to Science


Human Biomonitoring of Mycotoxins in Biological Samples

Kolawole Ifeoluwa Ayeni (Speaker), Magdalena Krausová (Contributor), Yunyun Gu (Contributor), Petra Pjevac (Contributor), David Seki (Contributor), Dominik Braun (Contributor), Lukas Wisgrill (Contributor), David Berry (Contributor), Chibundu N. Ezekiel (Contributor), Caroline H. Johnson (Contributor) & Benedikt Warth (Contributor)

21 Jun 2023

Activity: Talks and presentationsTalk or oral contributionScience to Science


Plasma & stool metabolomics to decipher host-metabolome-microbiome interactions in premature infants

Manuel Pristner (Speaker), Daniel Wasinger (Contributor), David Seki (Contributor), David Berry (Contributor), Lukas Wisgrill (Contributor) & Benedikt Warth (Contributor)

21 Jun 2023

Activity: Talks and presentationsTalk or oral contributionScience to Science


Untargeted and targeted metabolomics of plasma and fecal samples from a cohort of extremely premature infants

Manuel Pristner (Contributor), Daniel Wasinger (Contributor), Filip David Seki (Contributor), David Berry (Contributor), Lukas Wisgrill (Contributor) & Benedikt Warth (Contributor)

19 Jun 2023

Activity: Talks and presentationsTalk or oral contributionScience to Science


Invited Speaker: Univestity Lausanne

David Berry (Speaker)

23 May 2023

Activity: Talks and presentationsTalk or oral contributionScience to Science


Untargeted and targeted metabolomics of plasma and fecal samples from a cohort of extremely premature infants

Manuel Pristner (Speaker), Daniel Wasinger (Contributor), Filip David Seki (Contributor), David Berry (Contributor), Lukas Wisgrill (Contributor) & Benedikt Warth (Contributor)

11 Apr 2023

Activity: Talks and presentationsTalk or oral contributionScience to Science


4th Ghent Gut inflamation Group Meeting

David Berry (Invited speaker)

8 Feb 202310 Feb 2023

Activity: Talks and presentationsTalk or oral contributionScience to Science


Invited Speaker: Nova Medical School, Lisbon, Portugal

David Berry (Invited speaker)

25 Jan 2023

Activity: Talks and presentationsTalk or oral contributionScience to Science


Starting off on the right foot: Microbiome and gut-brain axis development in extremely premature infants

David Berry (Speaker)

24 Nov 2022

Activity: Talks and presentationsTalk or oral contributionScience to Science


Disruption of mucosal homeostasis in acute dietary fiber deprivation

David Berry (Speaker)

28 Jul 2022

Activity: Talks and presentationsTalk or oral contributionScience to Science


Metabolomics of plasma and fecal samples obtained from a cohort of extremely premature infants

Manuel Pristner (Speaker), Filip David Seki (Contributor), David Berry (Contributor), Lukas Wisgrill (Contributor) & Benedikt Warth (Contributor)

13 Jun 2022

Activity: Talks and presentationsTalk or oral contributionScience to Science


The bidirectional relationship between Alternaria mycotoxins and the gut microbiota

Francesco Crudo (Speaker), Georg Aichinger (Contributor), Elisabeth Varga (Contributor), Luca Dellafiora (Contributor), Benedikt Warth (Contributor), David Berry (Contributor), Chiara Dall'Asta (Contributor), Doris Marko (Contributor) & Francesco Crudo (Keynote speaker)

16 May 2022

Activity: Talks and presentationsTalk or oral contributionScience to Science


Development of a targeted LC-MS/MS method for the simultaneous detection of recently discovered bile acid conjugates

Daniel Wasinger (Speaker), David Berry (Contributor), Lukas Wisgrill (Contributor), David Seki (Contributor), Benedikt Warth (Contributor) & Manuel Pristner (Contributor)

12 May 2022

Activity: Talks and presentationsTalk or oral contributionScience to Science


Metabolomics of plasma and fecal samples obtained from a cohort of extremely premature infants

Manuel Pristner (Speaker), David Berry (Contributor), Lukas Wisgrill (Contributor), David Seki (Contributor) & Benedikt Warth (Contributor)

12 May 2022

Activity: Talks and presentationsTalk or oral contributionScience to Science


Revealing microbiome function with stable isotope probing

David Berry (Speaker)

28 Apr 2022

Activity: Talks and presentationsTalk or oral contributionScience to Science


Microbial ecology of gut mucus degradation and enteropathogen colonization

David Berry (Speaker)

19 Apr 2022

Activity: Talks and presentationsTalk or oral contributionScience to Science


Potential impact of mycotoxins on the developing gut microbiome in Nigerian infants

Kolawole I. Ayeni (Invited speaker), Magdalena Krausová (Contributor), Dominik Braun (Contributor), Petra Pjevac (Contributor), Lukas Wisgrill (Contributor), David Berry (Contributor) & Benedikt Warth (Contributor)

12 Oct 2021

Activity: Talks and presentationsTalk or oral contributionScience to Science


Untargeted metabolomics of plasma and fecal samples obtained from a cohort of extremely premature infants

Manuel Pristner (Speaker), Filip David Seki (Contributor), Lukas Wisgrill (Contributor), David Berry (Contributor) & Benedikt Warth (Contributor)

11 Jun 2021

Activity: Talks and presentationsTalk or oral contributionScience to Science


In vitro interactions of Alternaria mycotoxins with the gut microbiota: a birectional relationship

Francesco Crudo (Speaker), Georg Aichinger (Contributor), Jovana Mihajlovic (Contributor), Elisabeth Varga (Contributor), Luca Dellafiora (Contributor), Benedikt Warth (Contributor), Chiara Dall'Asta (Contributor), David Berry (Contributor) & Doris Marko (Contributor)

31 May 2021

Activity: Talks and presentationsTalk or oral contributionScience to Science


Why is sweet not just sweet? The mouthfeel specified as the changes in salivary flow and viscoelasticity after orosensory stimulation with sucrose and non-caloric sweeteners

Corinna Miriam Deck (Speaker), Ana Vidakovic (Contributor), Petra Pjevac (Contributor), Bela Hausmann (Contributor), Gerhard Schleining (Contributor), Jakob P. Ley (Contributor), David Berry (Contributor), Joachim Hans (Contributor), Martin Wendelin (Contributor), Jürgen König (Contributor), Veronika Somoza (Contributor) & Barbara Lieder (Contributor)

10 May 2021

Activity: Talks and presentationsTalk or oral contributionScience to Science


Integrating microbiomics and metabolomics: A primer for non-microbiologists

David Berry (Speaker)

14 Nov 2020

Activity: Talks and presentationsTalk or oral contributionScience to Science


Interactions between micronutrients and the microbiota

David Berry (Speaker)

20 Jan 2020

Activity: Talks and presentationsTalk or oral contributionScience to Science


Evaluating the Selectivity of Prebiotics: Inulin as a case study

Alessandra Riva (Speaker) & David Berry (Contributor)

8 Nov 20189 Nov 2018

Activity: Talks and presentationsTalk or oral contributionScience to Science


Living on the edge: Illuminating the niche of mucus-degrading bacteria in the gut

David Berry (Speaker)

14 Aug 2018

Activity: Talks and presentationsTalk or oral contributionScience to Science


Foraging on the host: Exploring the diversity of mucin degrading bacteria in the gut

David Berry (Speaker)

21 Jun 2018

Activity: Talks and presentationsTalk or oral contributionScience to Science


Foraging on the host: Exploring the diversity of mucin-degrading bacteria in the gut

David Berry (Speaker)

10 May 2018

Activity: Talks and presentationsTalk or oral contributionScience to Science


Revealing microbial ecophysiology with Raman microspectroscopy

David Berry (Speaker)

26 Jan 2018

Activity: Talks and presentationsTalk or oral contributionScience to Science


Studying microbial communities using Raman microspectroscopy.

David Berry (Speaker)

13 Dec 2017

Activity: Talks and presentationsTalk or oral contributionScience to Science


Insights into gut microbiota function using single-cell isotope probing.

David Berry (Speaker)

2 Nov 2017

Activity: Talks and presentationsTalk or oral contributionScience to Science


Insights into gut microbiota function using single-cell isotope probing.

David Berry (Speaker)

1 Nov 2017

Activity: Talks and presentationsTalk or oral contributionScience to Science


An Introduction to Raman Microspectroscopy.

David Berry (Speaker)

18 Oct 2017

Activity: Talks and presentationsTalk or oral contributionScience to Science


Sorting and sequencing active host-derived compound foragers from the mouse gut microbiota

Maria de Fatima Cardoso Pereira (Speaker) & David Berry (Contributor)

12 Oct 2017

Activity: Talks and presentationsTalk or oral contributionScience to Science


Insights into gut microbiota function using single-cell approaches.

David Berry (Speaker)

22 Sep 2017

Activity: Talks and presentationsTalk or oral contributionScience to Science


Long term consumption of anthocyanin-rich fruit juice: Impact on antioxidative markers and gut microbiota.

David Berry (Speaker)

20 Jun 2017

Activity: Talks and presentationsTalk or oral contributionScience to Science


Insights into gut microbiota function using single-cell isotope probing.

David Berry (Speaker)

3 Jun 2017

Activity: Talks and presentationsTalk or oral contributionScience to Science


Functional analysis of the gut microbiota using single-cell isotope probing.

David Berry (Speaker)

11 Apr 2017

Activity: Talks and presentationsTalk or oral contributionScience to Science


New single cell tools for functional analyses of microbes in their ecosystems.

David Berry (Speaker)

27 Feb 2017

Activity: Talks and presentationsTalk or oral contributionScience to Science


Unraveling nutrient flows in the gut microbiota.

David Berry (Speaker)

23 Feb 2017

Activity: Talks and presentationsTalk or oral contributionScience to Science


Living on the edge: Exploring the activity of mucus-associated gut microbiota.

David Berry (Speaker)

15 Feb 2017

Activity: Talks and presentationsTalk or oral contributionScience to Science


Functional analysis of the gut microbiota using single cell isotope probing

David Berry (Invited speaker)

30 Nov 2016

Activity: Talks and presentationsTalk or oral contributionOther



Insights into gut microbiota function using single cell isotope probing

David Berry (Invited speaker)

14 Sep 2016

Activity: Talks and presentationsTalk or oral contributionOther


Exploring N utilisation by the gut microbiota using single-cell isotope probing

David Berry (Invited speaker)

6 Sep 2016

Activity: Talks and presentationsTalk or oral contributionOther


Revealing the activity of the gut microbiota using single cell stable isotope probing

David Berry (Invited speaker)

23 Aug 2016

Activity: Talks and presentationsTalk or oral contributionOther


Living on the edge: Exploring the activity of mucus-associated gut microbiota

David Berry (Invited speaker)

7 Jul 2016

Activity: Talks and presentationsTalk or oral contributionOther


New single cell tools for functional analyses of microbes in their ecosystems

David Berry (Invited speaker)

4 Jul 2016

Activity: Talks and presentationsTalk or oral contributionOther


Identifying and sorting host compound foragers from the gut microbiota by heavy water-based activity labelling and Raman microspectroscopy

Maria de Fatima Cardoso Pereira (Speaker), Michael Wagner (Contributor), Barbara Szirányi (Contributor) & David Berry (Contributor)

25 Jun 2016

Activity: Talks and presentationsTalk or oral contributionScience to Science


Functional analysis of the gut microbiota using single-cell isotope probing

David Berry (Keynote speaker)

20 Jun 2016

Activity: Talks and presentationsTalk or oral contributionOther


Living on the edge:Exploring the activity of mucus-associated gut microbiota

David Berry (Invited speaker)

11 Nov 2015

Activity: Talks and presentationsTalk or oral contributionOther


Fecal Microbiota Transplantation: Theory, Practice, and Prospects

David Berry (Invited speaker)

2 Oct 2015

Activity: Talks and presentationsTalk or oral contributionOther


Identifying and sorting host compound foragers from the gut microbiota by heavy water-based activity labelling and Raman microspectroscopy

Maria de Fatima Cardoso Pereira (Speaker), David Berry (Contributor) & Michael Wagner (Contributor)

12 Jul 2015

Activity: Talks and presentationsTalk or oral contributionScience to Science


Basic and applied aspects of the gut microbiota: From novel approaches to study microbiome activity to fecal transplantation

David Berry (Invited speaker)

15 Jun 2015

Activity: Talks and presentationsTalk or oral contributionOther


Exploring microbial physiology in complex communities using single cell stable isotope probing

David Berry (Invited speaker)

18 May 2015

Activity: Talks and presentationsTalk or oral contributionOther


Fecal microbiota transplantation for treatment of ulcerative colitis

David Berry (Invited speaker)

17 Mar 2015

Activity: Talks and presentationsTalk or oral contributionOther


Exploring the physiology of microbes in complex communities using single cell stable isotope probing

David Berry (Invited speaker)

19 Jan 2015

Activity: Talks and presentationsTalk or oral contributionOther


Exploring the function of the gut microbiota using single cell stable isotope probing

David Berry (Invited speaker)

21 Oct 2014

Activity: Talks and presentationsTalk or oral contributionOther


Variation in bacterial community stability after fecal microbiota transplantation

David Berry (Invited speaker)

17 Oct 2014

Activity: Talks and presentationsTalk or oral contributionOther


Exploring the function of microbial communities using single cell stable isotope probing

David Berry (Invited speaker)

20 Aug 2014

Activity: Talks and presentationsTalk or oral contributionOther



Exploring the function of microbial communities using single cell stable isotope probing

David Berry (Invited speaker)

7 Aug 2014

Activity: Talks and presentationsTalk or oral contributionOther


Exploring the function of microbial communities using single cell stable isotope probing

David Berry (Invited speaker)

5 Aug 2014

Activity: Talks and presentationsTalk or oral contributionOther


Foraging on the host: Uncovering metabolic host-gut microbiota interactions at the single cell level

David Berry (Invited speaker)

10 Jun 2014

Activity: Talks and presentationsTalk or oral contributionOther


Single Cell Isotope Probing of Microbes via Raman Microspectroscopy: A New Way of in Situ functional Analyses and Cell Sorting

David Berry (Invited speaker)

20 Mar 2014

Activity: Talks and presentationsTalk or oral contributionOther


Metabolic individuality in the intestinal wilderness: A novel single cell approach to study in vivo function of intestinal microbiota members

David Berry (Invited speaker)

29 Jun 2013

Activity: Talks and presentationsTalk or oral contributionOther


Deciphering single cell microbial physiology using Raman microspectroscopy and NanoSIMS

David Berry (Invited speaker)

21 Apr 2013

Activity: Talks and presentationsTalk or oral contributionOther


Ecological and evolutionary aspects of the gut microbiota in health and inflammation

David Berry (Invited speaker)

21 Mar 2013

Activity: Talks and presentationsTalk or oral contributionOther


Structure and function of the gut microbiota in health and inflammation

David Berry (Invited speaker)

19 Mar 2013

Activity: Talks and presentationsTalk or oral contributionOther


Applied and basic properties of the intestinal microbiota

David Berry (Invited speaker)

12 Nov 2012

Activity: Talks and presentationsTalk or oral contributionOther


Foraging on the host: Uncovering metabolic host-gut microbiota interactions at the single cell level

David Berry (Speaker)

2 Sep 2012

Activity: Talks and presentationsTalk or oral contributionOther


Foraging on the host: Uncovering metabolic host-gut microbiota interactions at the single cell level.

David Berry (Speaker)

19 Aug 2012

Activity: Talks and presentationsTalk or oral contributionOther


Foraging on the host: Uncovering metabolic host-gut microbiota interactions at the single cell level

David Berry (Speaker)

17 Jun 2012

Activity: Talks and presentationsTalk or oral contributionOther


Foraging on the host: Uncovering host-symbiont interactions in the gut by combining stable isotope labeling and molecular tools.

David Berry (Speaker)

4 Nov 2011

Activity: Talks and presentationsTalk or oral contributionOther


Exploring the ecophysiology of mucus-degrading microbiota in the gut: an in vivo stable isotope labeling approach.

David Berry (Speaker)

10 Jul 2011

Activity: Talks and presentationsTalk or oral contributionOther




Dietary nitrate, vascular function and inflammation

Neubauer, O., Wolzt, M., Berry, D., Wagner, K., Pilat-Michalek, N., Strasser, E., Peake, J. M., Woodman, R., Bondonno, C. & Hodgson, J.

Project: Research funding



BaMiKO: BaMiKo: Fibers, Microbiologie and Cooking

Berry, D.

1/02/241/02/26

Project: Research funding


Microbiom-induced pruritus

Berry, D. & Böttcher, T.

15/02/2314/02/27

Project: Research funding


Impact of gut microbiome on tick susceptibility to Borrelia

Hodzic, A., Berry, D. & Cabezas-Cruz, A.

1/09/2228/02/26

Project: Research funding


REWIRE: REinforcing Women In REsearch

Benetton, S., Schaschl, H., Zinner, L., Vidnes, T., Grabner, L., Fuchslueger, L., Richter, A., Johnston, R., Calori, A., Ther, P., Schmidt Cernohorska, M., Dammermann, A., Spisiakova, E., Kaindl, K., Batstone, L., Jobst, K. S., Sposini, V., Likos, C., Kahn, R. J., Andrews, T., Molchanova, A., Stefanelli, U., Axyonova, V., Lecheler, S., Vider, J., Schweitzer, P., Miklaszewska, M., Weckwerth, W., Castejon Caballero, N., Marko, D., Mrovlje, M., Marchart, O., Saak, C., Mezger-Backus, E. H. G., Schnorr, S. L. & Berry, D.

1/06/2031/05/25

Project: Research funding



FunKeyGut: Illuminating Functional Networks and Keystone Species in the Gut

Berry, D., Urbanic, B., Holzleitner, N. & Wagner, C.

1/04/1730/09/22

Project: Research funding


Mukosale Biofilme bei Colitis u

Berry, D., Urbanic, B., Holzleitner, N. & Gasche, C.

1/11/1631/10/19

Project: Research funding


MUCDIFF

Berry, D., Horn, M., Urbanic, B. & Holzleitner, N.

1/09/1531/08/17

Project: Research funding


DOE UNC Imaging Platform

Berry, D., Horn, M., Urbanic, B. & Holzleitner, N.

1/07/1530/06/19

Project: Research funding


Öko-evolutionäre Prozesse in Da

Berry, D., Holzleitner, N. & Urbanic, B.

9/03/1531/08/20

Project: Research funding


Mucus-assoz. Darm.

Berry, D., Holzleitner, N. & Urbanic, B.

4/10/1314/10/18

Project: Research funding



Department of Food Chemistry and Toxicology

Währinger Straße 38
1090 Wien

T: +43-1-4277-91212

david.berry@univie.ac.at