Graffius, S., Garzón, J. F. G., Zehl, M., Pjevac, P., Kirkegaard, R., Flieder, M., Loy, A., Rattei, T., Ostrovsky, A., & Zotchev, S. B. (2023). Secondary Metabolite Production Potential in a Microbiome of the Freshwater Sponge Spongilla lacustris. Microbiology Spectrum, e0435322. https://doi.org/10.1128/spectrum.04353-22

Halter, T., Köstlbacher, S., Rattei, T., Hendrickx, F., Manzano-Marín, A., & Horn, M. (2023). One to host them all: genomics of the diverse bacterial endosymbionts of the spider Oedothorax gibbosus. Microbial genomics, 9(2), [000943]. https://doi.org/10.1101/2022.05.31.494226, https://doi.org/10.1099/mgen.0.000943

Tocino Márquez, I., Zehl, M., Pjevac, P., Kirkegaard, R., Flieder, M., Loy, A., Rattei, T., & Zotchev, S. (2022). Developing co-cultures of bacterial isolates from the bryozoan Cristatella mucedo for the discovery of novel secondary metabolites. Planta Medica, 88(15), 1438-1438.

Sekurova, O. N., Zehl, M., Predl, M., Hunyadi, P., Rattei, T., & Zotchev, S. B. (2022). Targeted Metabolomics and High-Throughput RNA Sequencing-Based Transcriptomics Reveal Massive Changes in the Streptomyces venezuelae NRRL B-65442 Metabolism Caused by Ethanol Shock. Microbiology Spectrum, 10(6), [e0367222]. https://doi.org/10.1128/spectrum.03672-22

Bernard, C., Locard-Paulet, M., Noël, C., Duchateau, M., Giai Gianetto, Q., Moumen, B., Rattei, T., Hechard, Y., Jensen, L. J., Matondo, M., & Samba-Louaka, A. (2022). A time-resolved multi-omics atlas of Acanthamoeba castellanii encystment. Nature Communications, 13(1), [4104]. https://doi.org/10.1038/s41467-022-31832-0

Maixner, F., Sarhan, M. S., Huang, K. D., Tett, A., Schoenafinger, A., Zingale, S., Blanco-Míguez, A., Manghi, P., Cemper-Kiesslich, J., Rosendahl, W., Kusebauch, U., Morrone, S. R., Hoopmann, M. R., Rota-Stabelli, O., Rattei, T., Moritz, R. L., Oeggl, K., Segata, N., Zink, A., ... Kowarik, K. (2021). Hallstatt miners consumed blue cheese and beer during the Iron Age and retained a non-Westernized gut microbiome until the Baroque period. Current Biology, 31(23), 5149-5162. https://doi.org/10.1016/j.cub.2021.09.031

Majek, P., Lueftinger, L., Beisken, S., Rattei, T., & Materna, A. (2021). Genome-Wide Mutation Scoring for Machine-Learning-Based Antimicrobial Resistance Prediction. International Journal of Molecular Sciences, 22(23), [13049]. https://doi.org/10.3390/ijms222313049

Flieder, M., Buongiorno, J., Herbold, C. W., Hausmann, B., Rattei, T., Lloyd, K. G., Loy, A., & Wasmund, K. (2021). Novel taxa of Acidobacteriota implicated in seafloor sulfur cycling. The ISME Journal, 15(11), 3159-3180. https://doi.org/10.1038/s41396-021-00992-0

Hanson, B. T., Dimitri Kits, K., Löffler, J., Burrichter, A. G., Fiedler, A., Denger, K., Frommeyer, B., Herbold, C. W., Rattei, T., Karcher, N., Segata, N., Schleheck, D., & Loy, A. (2021). Sulfoquinovose is a select nutrient of prominent bacteria and a source of hydrogen sulfide in the human gut. The ISME Journal, 15(9), 2779-2791. https://doi.org/10.1038/s41396-021-00968-0

Lueftinger, L., Ferreira, I., Frank, B. J. H., Beisken, S., Weinberger, J., von Haeseler, A., Rattei, T., Hofstaetter, J. G., Posch, A. E., & Materna, A. (2021). Predictive Antibiotic Susceptibility Testing by Next-Generation Sequencing for Periprosthetic Joint Infections: Potential and Limitations. Biomedicines, 9(8), [910]. https://doi.org/10.3390/biomedicines9080910

Wasmund, K., Pelikan, C., Schintlmeister, A., Wagner, M., Watzka, M., Richter, A., Bhatnagar, S., Noel, A., Hubert, C. R. J., Rattei, T., Hofmann, T., Hausmann, B., Herbold, C. W., & Loy, A. (2021). Genomic insights into diverse bacterial taxa that degrade extracellular DNA in marine sediments. Nature Microbiology, 6(7), 885-898. https://doi.org/10.1038/s41564-021-00917-9

Gerner, S. M., Graf, A. B., & Rattei, T. (2021). Tamock: simulation of habitat-specific benchmark data in metagenomics. BMC Bioinformatics, 22(1), [227]. https://doi.org/10.1186/s12859-021-04154-z

Lüftinger, L., Majek, P., Beisken, S., Rattei, T., & Posch, A. E. (2021). Learning From Limited Data: Towards Best Practice Techniques for Antimicrobial Resistance Prediction From Whole Genome Sequencing Data. Frontiers in Cellular and Infection Microbiology, 11, [610348]. https://doi.org/10.3389/fcimb.2021.610348

Walliser, B., Lucaciu, C. R., Molitor, C., Marinovic, S., Nitarska, D. A., Aktas, D., Rattei, T., Kampatsikas, I., Stich, K., Haselmair-Gosch, C., & Halbwirth, H. (2021). Dahlia variabilis cultivar 'Seattle' as a model plant for anthochlor biosynthesis. Plant Physiology and Biochemistry, 159, 193-201. https://doi.org/10.1016/j.plaphy.2020.12.016

Feldbauer, R., Gosch, L., Lüftinger, L., Hyden, P., Flexer, A., & Rattei, T. (2020). DeepNOG: Fast and accurate protein orthologous group assignment. Bioinformatics, 36(22-23), 5304-5312. https://doi.org/10.1093/bioinformatics/btaa1051

Steiner, P. A., Geijo, J., Fadeev, E., Obiol, A., Sintes, E., Rattei, T., & Herndl, G. J. (2020). Functional Seasonality of Free-Living and Particle-Associated Prokaryotic Communities in the Coastal Adriatic Sea. Frontiers in Microbiology, 11, [584222]. https://doi.org/10.3389/fmicb.2020.584222

Pascelli, C., Laffy, P. W., Botté, E., Kupresanin, M., Rattei, T., Lurgi, M., Ravasi, T., & Webster, N. S. (2020). Viral ecogenomics across the Porifera. Microbiome, 8(1), [144]. https://doi.org/10.1186/s40168-020-00919-5

Herrera, P., Schuster, L., Wentrup, C., König, L., Kempinger, T., Na, H., Schwarz, J., Köstlbacher, S., Wascher, F., Zojer, M., Rattei, T., & Horn, M. (2020). Molecular causes of an evolutionary shift along the parasitism-mutualism continuum in a bacterial symbiont. Proceedings of the National Academy of Sciences of the United States of America (PNAS), 117(35), 21658-21666. https://doi.org/10.1073/pnas.2005536117

Esteves, F. G., Dos Santos-Pinto, J. R. A., Ferro, M., Sialana, F. J., Smidak, R., Rares, L. C., Nussbaumer, T., Rattei, T., Bilban, M., Bacci Júnior, M., Lubec, G., & Palma, M. S. (2020). Revealing the Venomous Secrets of the Spider's Web. Journal of Proteome Research, 19(8), 3044-3059. https://doi.org/10.1021/acs.jproteome.0c00086

Reider, S. J., Moosmang, S., Tragust, J., Trgovec-Greif, L., Tragust, S., Perschy, L., Przysiecki, N., Sturm, S., Tilg, H., Stuppner, H., Rattei, T., & Moschen, A. R. (2020). Prebiotic Effects of Partially Hydrolyzed Guar Gum on the Composition and Function of the Human Microbiota-Results from the PAGODA Trial. Nutrients, 12(5), [1257]. https://doi.org/10.3390/nu12051257