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Ye, H., Borusak, S., Eberl, C., Krasenbrink, J., Weiss, A. S., Chen, S., Hanson, B. T., Hausmann, B., Herbold, C. W., Pristner, M., Zwirzitz, B., Warth, B., Pjevac, P., Schleheck, D., Stecher, B., & Loy, A. (2023). Ecophysiology and interactions of a taurine-respiring bacterium in the mouse gut. Nature Communications, 14(1), [5533]. https://doi.org/10.1038/s41467-023-41008-z

Diao, M., Dyksma, S., Koeksoy, E., Ngugi, D. K., Anantharaman, K., Loy, A., & Pester, M. (2023). Global diversity and inferred ecophysiology of microorganisms with the potential for dissimilatory sulfate/sulfite reduction. FEMS Microbiology Reviews, 47(5), [fuad058]. https://doi.org/10.1093/femsre/fuad058

Graffius, S., Garzón, J. F. G., Zehl, M., Pjevac, P., Kirkegaard, R., Flieder, M., Loy, A., Rattei, T., Ostrovsky, A., & Zotchev, S. B. (2023). Secondary Metabolite Production Potential in a Microbiome of the Freshwater Sponge Spongilla lacustris. Microbiology Spectrum, 11(2), [e04353-22]. https://doi.org/10.1128/spectrum.04353-22, https://doi.org/10.1128/spectrum.04353-22

Tocino Márquez, I., Zehl, M., Pjevac, P., Kirkegaard, R., Flieder, M., Loy, A., Rattei, T., & Zotchev, S. (2022). Developing co-cultures of bacterial isolates from the bryozoan Cristatella mucedo for the discovery of novel secondary metabolites. Planta Medica, 88(15), 1438-1438.

Gwak, J-H., Awala, S. I., Nguyen, N-L., Yu, W-J., Yang, H-Y., von Bergen, M., Jehmlich, N., Kits, K. D., Loy, A., Dunfield, P. F., Dahl, C., Hyun, J-H., & Rhee, S-K. (2022). Sulfur and methane oxidation by a single microorganism. Proceedings of the National Academy of Sciences of the United States of America, 119(32), [e2114799119]. https://doi.org/10.1073/pnas.2114799119

Flieder, M., Buongiorno, J., Herbold, C. W., Hausmann, B., Rattei, T., Lloyd, K. G., Loy, A., & Wasmund, K. (2021). Novel taxa of Acidobacteriota implicated in seafloor sulfur cycling. The ISME Journal, 15(11), 3159-3180. https://doi.org/10.1038/s41396-021-00992-0

Hanson, B. T., Dimitri Kits, K., Löffler, J., Burrichter, A. G., Fiedler, A., Denger, K., Frommeyer, B., Herbold, C. W., Rattei, T., Karcher, N., Segata, N., Schleheck, D., & Loy, A. (2021). Sulfoquinovose is a select nutrient of prominent bacteria and a source of hydrogen sulfide in the human gut. The ISME Journal, 15(9), 2779-2791. https://doi.org/10.1038/s41396-021-00968-0

Wasmund, K., Pelikan, C., Schintlmeister, A., Wagner, M., Watzka, M., Richter, A., Bhatnagar, S., Noel, A., Hubert, C. R. J., Rattei, T., Hofmann, T., Hausmann, B., Herbold, C. W., & Loy, A. (2021). Genomic insights into diverse bacterial taxa that degrade extracellular DNA in marine sediments. Nature Microbiology, 6(7), 885-898. https://doi.org/10.1038/s41564-021-00917-9

Pjevac, P., Hausmann, B., Schwarz, J., Kohl, G., Herbold, C. W., Loy, A., & Berry, D. (2021). An Economical and Flexible Dual Barcoding, Two-Step PCR Approach for Highly Multiplexed Amplicon Sequencing. Frontiers in Microbiology, 12, [669776]. https://doi.org/10.3389/fmicb.2021.669776

Pelikan, C., Wasmund, K., Glombitza, C., Hausmann, B., Herbold, C. W., Flieder, M., & Loy, A. (2021). Anaerobic bacterial degradation of protein and lipid macromolecules in subarctic marine sediment. The ISME Journal: multidisciplinary journal of microbial ecology, 15(3), 833-847. https://doi.org/10.1038/s41396-020-00817-6

Waite, D. W., Chuvochina, M., Pelikan, C., Parks, D. H., Yilmaz, P., Wagner, M., Loy, A., Naganuma, T., Nakai, R., Whitman, W. B., Hahn, M. W., Kuever, J., & Hugenholtz, P. (2020). Proposal to reclassify the proteobacterial classes Deltaproteobacteria and Oligoflexia, and the phylum Thermodesulfobacteria into four phyla reflecting major functional capabilities. International Journal of Systematic and Evolutionary Microbiology, 70(11), 5972-6016. [004213]. https://doi.org/10.1099/ijsem.0.004213

Frommeyer, B., Fiedler, A. W., Oehler, S. R., Hanson, B. T., Loy, A., Franchini, P., Spiteller, D., & Schleheck, D. (2020). Environmental and Intestinal Phylum Firmicutes Bacteria Metabolize the Plant Sugar Sulfoquinovose via a 6-Deoxy-6-sulfofructose Transaldolase Pathway. Iscience, 23(9), [101510]. https://doi.org/10.1016/j.isci.2020.101510

Buongiorno, J., Sipes, K., Wasmund, K., Loy, A., & Lloyd, K. G. (2020). Woeseiales transcriptional response to shallow burial in Arctic fjord surface sediment. PLoS ONE, 15(8), [e0234839]. https://doi.org/10.1371/journal.pone.0234839

Berg, G., Rybakova, D., Fischer, D., Cernava, T., Vergès, M-C. C., Charles, T., Chen, X., Cocolin, L., Eversole, K., Corral, G. H., Kazou, M., Kinkel, L., Lange, L., Lima, N., Loy, A., Macklin, J. A., Maguin, E., Mauchline, T., McClure, R., ... Schloter, M. (2020). Microbiome definition re-visited: old concepts and new challenges. Microbiome, 8(1), [103]. https://doi.org/10.1186/s40168-020-00875-0

Pelikan, C., Jaussi, M., Wasmund, K., Seidenkrantz, M-S., Pearce, C., Kuzyk, Z. Z. A., Herbold, C. W., Røy, H., Kjeldsen, K. U., & Loy, A. (2019). Glacial Runoff Promotes Deep Burial of Sulfur Cycling-Associated Microorganisms in Marine Sediments. Frontiers in Microbiology, 10, [2558]. https://doi.org/10.3389/fmicb.2019.02558

Colangelo-Lillis, J., Pelikan, C., Herbold, C., Altshuler, I., Loy, A., Whyte, L. G., & Wing, B. A. (2019). Diversity decoupled from sulfur isotope fractionation in a sulfate‐reducing microbial community. Geobiology, 17(6), 660-675. https://doi.org/10.1111/gbi.12356

Riva, A., Kuzyk, O., Forsberg, E., Siuzdak, G., Pfann, C., Herbold, C., Daims, H., Loy, A., Warth, B., & Berry, D. (2019). A fiber-deprived diet disturbs the fine-scale spatial architecture of the murine colon microbiome. Nature Communications, 10(1), [4366]. https://doi.org/10.1038/s41467-019-12413-0

Hausmann, B., Vandieken, V., Pjevac, P., Schreck, K., Herbold, C. W., & Loy, A. (2019). Draft Genome Sequence of Desulfosporosinus fructosivorans Strain 63.6FT, Isolated from Marine Sediment in the Baltic Sea. Microbiology resource announcements, 8(31), [e00427-19]. https://doi.org/10.1128/MRA.00427-19

Hausmann, B., Pjevac, P., Huemer, M., Herbold, C. W., Pester, M., & Loy, A. (2019). Draft Genome Sequence of Desulfosporosinus sp. Strain Sb-LF, Isolated from an Acidic Peatland in Germany. Microbiology resource announcements, 8(29), [e00428-19]. https://doi.org/10.1128/MRA.00428-19

Herp, S., Brugiroux, S., Garzetti, D., Ring, D., Jochum, L. M., Beutler, M., Eberl, C., Hussain, S., Walter, S., Gerlach, R. G., Ruscheweyh, H. J., Huson, D., Sellin, M. E., Slack, E., Hanson, B., Loy, A., Baines, J. F., Rausch, P., Basic, M., ... Stecher, B. (2019). Mucispirillum schaedleri Antagonizes Salmonella Virulence to Protect Mice against Colitis. Cell Host & Microbe, 25(5), P681-694.e8. https://doi.org/10.1016/j.chom.2019.03.004