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Lee, U-J., Gwak, J-H., Choi, S., Jung, M-Y., Lee, T. K., Ryu, H., Imisi Awala, S., Wanek, W., Wagner, M., Quan, Z-X., & Rhee, S-K. (2024). "Ca. Nitrosocosmicus" members are the dominant archaea associated with plant rhizospheres. mSphere, [e0082124]. https://doi.org/10.1128/msphere.00821-24

Wasmund, K., Singleton, C., Dahl Dueholm, M. K., Wagner, M., & Nielsen, P. H. (2024). The predicted secreted proteome of activated sludge microorganisms indicates distinct nutrient niches. mSystems, 9(10), [e0030124]. https://doi.org/10.1128/msystems.00301-24

Gruseck, R. J., Palatinszky, M., Wagner, M., Hofmann, T., & Zumstein, M. (Angenommen/Im Druck). Quantification of Guanidine in Environmental Samples using Benzoin Derivatization and LC-MS Analysis. MethodsX, 13, [102972]. https://doi.org/10.1016/j.mex.2024.102972

Palatinszky, M., Herbold, C. W., Sedlacek, C. J., Pühringer, D., Kitzinger, K., Giguere, A. T., Wasmund, K., Nielsen, P. H., Dueholm, M. K. D., Jehmlich, N., Gruseck, R., Legin, A., Kostan, J., Krasnici, N., Schreiner, C., Palmetzhofer, J., Hofmann, T., Zumstein, M., Djinović-Carugo, K., ... Wagner, M. (2024). Growth of complete ammonia oxidizers on guanidine. Nature, 633, 646-653. https://doi.org/10.1038/s41586-024-07832-z

Bayer, B., Liu, S., Louie, K., Northen, T. R., Wagner, M., Daims, H., Carlson, C. A., & Santoro, A. E. (2024). Metabolite release by nitrifiers facilitates metabolic interactions in the ocean. The ISME Journal, 18(1), [wrae172]. https://doi.org/10.1093/ismejo/wrae172

Awala, S. I., Gwak, J-H., Kim, Y., Jung, M-Y., Dunfield, P. F., Wagner, M., & Rhee, S-K. (2024). Nitrous oxide respiration in acidophilic methanotrophs. Nature Communications, 15(1), [4226]. https://doi.org/10.1038/s41467-024-48161-z

Lee, K. S., Landry, Z., Athar, A., Alcolombri, U., Pramoj Na Ayutthaya, P., Berry, D., de Bettignies, P., Cheng, J-X., Csucs, G., Cui, L., Deckert, V., Dieing, T., Dionne, J., Doskocil, O., D'Souza, G., García-Timermans, C., Gierlinger, N., Goda, K., Hatzenpichler, R., ... Stocker, R. (2024). MicrobioRaman: an open-access web repository for microbiological Raman spectroscopy data. Nature Microbiology, 9(5), 1152-1156. https://doi.org/10.1038/s41564-024-01656-3

Glasl, B., Luter, H. M., Damjanovic, K., Kitzinger, K., Mueller, A. J., Mahler, L., Engelberts, J. P., Rix, L., Osvatic, J. T., Hausmann, B., Séneca, J., Daims, H., Pjevac, P., & Wagner, M. (2024). Co-occurring nitrifying symbiont lineages are vertically inherited and widespread in marine sponges. The ISME Journal, 18(1), [wrae069]. https://doi.org/10.1093/ismejo/wrae069

Hu, H., Kristensen, J. M., Herbold, C. W., Pjevac, P., Kitzinger, K., Hausmann, B., Dueholm, M. K. D., Nielsen, P. H., & Wagner, M. (2024). Global abundance patterns, diversity, and ecology of Patescibacteria in wastewater treatment plants. Microbiome, 12, [55]. https://doi.org/10.1186/s40168-024-01769-1

Riva, A., Rasoulimehrabani, H., Cruz-Rubio, J. M., Schnorr, S. L., von Baeckmann, C., Inan, D., Nikolov, G., Herbold, C. W., Hausmann, B., Pjevac, P., Schintlmeister, A., Spittler, A., Palatinszky, M., Kadunic, A., Hieger, N., Del Favero, G., von Bergen, M., Jehmlich, N., Watzka, M., ... Berry, D. (2023). Identification of inulin-responsive bacteria in the gut microbiota via multi-modal activity-based sorting. Nature Communications, 14(1), [8210]. https://doi.org/10.1038/s41467-023-43448-z

Daebeler, A., Güell-Bujons, Q., Mooshammer, M., Zechmeister, T., Herbold, C. W., Richter, A., Wagner, M., & Daims, H. (2023). Rapid nitrification involving comammox and canonical Nitrospira at extreme pH in saline-alkaline lakes. Environmental Microbiology, 25(5), 1055-1067. https://doi.org/10.1111/1462-2920.16337

Bjerg, J. J., Lustermans, J. J. M., Marshall, I. P. G., Mueller, A. J., Brokjær, S., Thorup, C. A., Tataru, P., Schmid, M., Wagner, M., Nielsen, L. P., & Schramm, A. (2023). Cable bacteria with electric connection to oxygen attract flocks of diverse bacteria. Nature Communications, 14(1), [1614]. https://doi.org/10.1038/s41467-023-37272-8

Engelberts, J. P., Robbins, S. J., Herbold, C. W., Moeller, F. U., Jehmlich, N., Laffy, P. W., Wagner, M., & Webster, N. S. (2023). Metabolic reconstruction of the near complete microbiome of the model sponge Ianthella basta. Environmental Microbiology, 25(3), 646-660. https://doi.org/10.1111/1462-2920.16302

Bai, Y., Guo, Z., Pereira, F. C., Wagner, M., & Cheng, J-X. (2023). Mid-Infrared Photothermal-Fluorescence In Situ Hybridization for Functional Analysis and Genetic Identification of Single Cells. Analytical Chemistry, 95(4), 2398-2405. https://doi.org/10.1021/acs.analchem.2c04474

Engelberts, J. P., Abdul Wahab, M., Maldonado, M., Rix, L., Marangon, E., Robbins, S., Wagner, M., & Webster, N. (2022). Microbes from Mum: symbiont transmission in the tropical reef sponge Ianthella basta. ISME Communications, 2, [90]. https://doi.org/10.1038/s43705-022-00173-w

Ge, X., Pereira, F. C., Mitteregger, M., Berry, D., Zhang, M., Hausmann, B., Zhang, J., Schintlmeister, A., Wagner, M., & Cheng, J-X. (2022). SRS-FISH: A high-throughput platform linking microbiome metabolism to identity at the single-cell level. Proceedings of the National Academy of Sciences of the United States of America, 119(26), [e2203519119]. https://doi.org/10.1073/pnas.2203519119

Singleton, C. M., Petriglieri, F., Wasmund, K., Nierychlo, M., Kondrotaite, Z., Peces, M., Dueholm, M. S., Wagner, M., & Nielsen, P. H. (2022). The novel genus, 'Candidatus Phosphoribacter', previously identified as Tetrasphaera, is the dominant polyphosphate accumulating lineage in EBPR wastewater treatment plants worldwide. ISME Journal, 16(6), 1605-1616. https://doi.org/10.1038/s41396-022-01212-z

Jung, M-Y., Sedlacek, C. J., Kits, K. D., Mueller, A. J., Rhee, S-K., Hink, L., Nicol, G. W., Bayer, B., Lehtovirta-Morley, L., Wright, C., de la Torre, J. R., Herbold, C. W., Pjevac, P., Daims, H., & Wagner, M. (2022). Ammonia-oxidizing archaea possess a wide range of cellular ammonia affinities. ISME Journal, 16(1), 272-283. https://doi.org/10.1038/s41396-021-01064-z

Liu, S., Jung, M-Y., Zhang, S., Wagner, M., Daims, H., & Wanek, W. (2021). Nitrogen Kinetic Isotope Effects of Nitrification by the Complete Ammonia Oxidizer Nitrospira inopinata. mSphere, 6(6), [e0063421]. https://doi.org/10.1128/mSphere.00634-21

Mayerhofer, W., Schintlmeister, A., Dietrich, M., Gorka, S., Wiesenbauer, J., Martin, V., Gabriel, R., Reipert, S., Weidinger, M., Clode, P., Wagner, M., Woebken, D., Richter, A., & Kaiser, C. (2021). Recently photoassimilated carbon and fungus-delivered nitrogen are spatially correlated in the ectomycorrhizal tissue of Fagus sylvatica. New Phytologist, 232(6), 2457-2474. https://doi.org/10.1111/nph.17591